Simple Surface Volume

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

Create Sulcus Label Volume

Associated formats

BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
JPEG image
MINC image
NIFTI-1 image
SPM image
TIFF image
TIFF(.tif) image

Associated ontology rules

  • brainvisa-3.0 :
    • {protocol}/{subject}/segment/LSimpleSurface_<subject>
    {protocol}/{subject}/segment/RSimpleSurface_<subject>
    {protocol}/{subject}/segment/{acquisition}/LSimpleSurface_<subject>
    {protocol}/{subject}/segment/{acquisition}/RSimpleSurface_<subject>
  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_auto/segmentation/LSimpleSurface_<subject>_<sulci_recognition_session>_auto
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_auto/segmentation/RSimpleSurface_<subject>_<sulci_recognition_session>_auto
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_manual/segmentation/LSimpleSurface_<subject>_<sulci_recognition_session>_manual
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_manual/segmentation/RSimpleSurface_<subject>_<sulci_recognition_session>_manual
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_best/segmentation/LSimpleSurface_<subject>_<sulci_recognition_session>_best
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_best/segmentation/RSimpleSurface_<subject>_<sulci_recognition_session>_best
  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_auto/segmentation/LSimpleSurface_<subject>_<sulci_recognition_session>_auto
    {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_auto/segmentation/RSimpleSurface_<subject>_<sulci_recognition_session>_auto
    {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_manual/segmentation/LSimpleSurface_<subject>_<sulci_recognition_session>_manual
    {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_manual/segmentation/RSimpleSurface_<subject>_<sulci_recognition_session>_manual
    {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_best/segmentation/LSimpleSurface_<subject>_<sulci_recognition_session>_best
    {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_best/segmentation/RSimpleSurface_<subject>_<sulci_recognition_session>_best
  • flat :
    • ./LSimpleSurface_<filename>
    ./RSimpleSurface_<filename>
  • morphologist-bids-1.0 :
    • sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_auto/segmentation/LSimpleSurface_<subject>_<sulci_recognition_session>_auto
    sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_auto/segmentation/RSimpleSurface_<subject>_<sulci_recognition_session>_auto
    sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_manual/segmentation/LSimpleSurface_<subject>_<sulci_recognition_session>_manual
    sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_manual/segmentation/RSimpleSurface_<subject>_<sulci_recognition_session>_manual
    sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_best/segmentation/LSimpleSurface_<subject>_<sulci_recognition_session>_best
    sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_best/segmentation/RSimpleSurface_<subject>_<sulci_recognition_session>_best
  • morphologist-bids-2.0 :
    • sub-{subject}/ses-{session}/{bids}/ana-{analysis}/folds/{graph_version}/sul-{sulci_recognition_session}_auto/segmentation/sub-<subject>_ses-<session>_<bids>_sul-<sulci_recognition_session>_hemi-L_simple_surface_auto
    sub-{subject}/ses-{session}/{bids}/ana-{analysis}/folds/{graph_version}/sul-{sulci_recognition_session}_auto/segmentation/sub-<subject>_ses-<session>_<bids>_sul-<sulci_recognition_session>_hemi-R_simple_surface_auto
    sub-{subject}/ses-{session}/{bids}/ana-{analysis}/folds/{graph_version}/sul-{sulci_recognition_session}_manual/segmentation/sub-<subject>_ses-<session>_<bids>_sul-<sulci_recognition_session>_hemi-L_simple_surface_manual
    sub-{subject}/ses-{session}/{bids}/ana-{analysis}/folds/{graph_version}/sul-{sulci_recognition_session}_manual/segmentation/sub-<subject>_ses-<session>_<bids>_sul-<sulci_recognition_session>_hemi-R_simple_surface_manual
    sub-{subject}/ses-{session}/{bids}/ana-{analysis}/folds/{graph_version}/sul-{sulci_recognition_session}_best/segmentation/LSimpleSurface_<subject>_<sulci_recognition_session>_best
    sub-{subject}/ses-{session}/{bids}/ana-{analysis}/folds/{graph_version}/sul-{sulci_recognition_session}_best/segmentation/RSimpleSurface_<subject>_<sulci_recognition_session>_best

    Key attributes

  • brainvisa-3.0 :
    • protocol ,  subject ,  side ,  acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  manually_labelled ,  automatically_labelled ,  best
  • brainvisa-3.2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  center ,  subject ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  manually_labelled ,  automatically_labelled ,  best
  • flat :
    • side
  • morphologist-bids-1.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  manually_labelled ,  automatically_labelled ,  best
  • morphologist-bids-2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  bids ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  manually_labelled ,  automatically_labelled ,  best